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RNA-seq Count Based Modules- TCGA
====================
Modules available in the TCGA count-based RNA-seq Pipeline. 

.. rst-class:: html-toggle
TCGA Download
=======
.. automodule:: omics_pipe.modules.TCGA_download
	:members:
	
.. rst-class:: html-toggle
FASTQC
=======
.. automodule:: omics_pipe.modules.fastqc
	:members:

.. rst-class:: html-toggle	
STAR Aligner
=======	
.. automodule:: omics_pipe.modules.star
	:members:

.. rst-class:: html-toggle		
HTSEQ-count
=======	
.. automodule:: omics_pipe.modules.htseq
	:members:	
	
.. rst-class:: html-toggle			
R Summary Report - DESEQ2
=====================
.. automodule:: omics_pipe.modules.RNAseq_report_counts
	:members: