Index
A
|
B
|
C
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
A
analyze_genes_on_merged_graph() (in module offsetbasedgraph.graphutils)
analyze_multipath_genes_for_alt() (in module offsetbasedgraph.graphutils)
approxEquals() (offsetbasedgraph.gene.Gene method)
assert_interval_in_graph() (offsetbasedgraph.Graph method)
assert_position_in_graph() (offsetbasedgraph.Graph method)
B
block_origin() (offsetbasedgraph.Graph static method)
C
connect_postitions() (offsetbasedgraph.Graph method)
connect_without_flanks() (in module offsetbasedgraph.graphcreators)
contains() (offsetbasedgraph.Interval method)
contains_rp() (offsetbasedgraph.Interval method)
convert_to_numeric_graph() (in module offsetbasedgraph.graphcreators)
convert_to_text_graph() (in module offsetbasedgraph.graphcreators)
copy() (offsetbasedgraph.Graph method)
(offsetbasedgraph.Translation method)
create_gene_dicts() (in module offsetbasedgraph.graphutils)
create_initial_grch38_graph() (in module offsetbasedgraph.graphcreators)
create_subgraph_around_alt_locus() (in module offsetbasedgraph.graphutils)
create_subgraph_from_blocks() (offsetbasedgraph.Graph method)
create_subgraph_from_intervals() (offsetbasedgraph.Graph method)
CriticalPathsMultiPathInterval (class in offsetbasedgraph)
F
find_all_critical_blocks() (offsetbasedgraph.Graph method)
find_critical_blocks() (offsetbasedgraph.Graph method)
find_parallell_blocks() (offsetbasedgraph.Graph method)
from_dict() (offsetbasedgraph.gene.Gene class method)
from_file() (offsetbasedgraph.Graph static method)
(offsetbasedgraph.Translation static method)
fuzzy_gene_analysis() (in module offsetbasedgraph.graphutils)
FuzzyMultipathInterval (class in offsetbasedgraph)
G
Gene (class in offsetbasedgraph.gene)
GeneralMultiPathInterval (class in offsetbasedgraph)
get_adj_list() (offsetbasedgraph.Interval method)
get_alt_loci_positions() (in module offsetbasedgraph.graphutils)
get_contained_pairs() (offsetbasedgraph.gene.Gene method)
get_external_edges() (offsetbasedgraph.Translation method)
get_first_blocks() (offsetbasedgraph.Graph method)
get_gene_objects_as_intervals() (in module offsetbasedgraph.graphutils)
get_internal_edges() (offsetbasedgraph.Translation method)
get_last_blocks() (offsetbasedgraph.Graph method)
get_old_edges() (offsetbasedgraph.Translation method)
get_position_from_offset() (offsetbasedgraph.Interval method)
get_single_path_intervals() (offsetbasedgraph.GeneralMultiPathInterval method)
get_transcript_length() (offsetbasedgraph.gene.Gene method)
Graph (class in offsetbasedgraph)
grch38_graph_to_numeric() (in module offsetbasedgraph.graphcreators)
H
has_identical_structure() (offsetbasedgraph.Graph method)
I
Interval (class in offsetbasedgraph)
is_main_name() (offsetbasedgraph.Graph static method)
L
length() (offsetbasedgraph.FuzzyMultipathInterval method)
(offsetbasedgraph.gene.Gene method)
level_dict() (offsetbasedgraph.Graph static method)
M
make_name_translation() (offsetbasedgraph.Translation class method)
merge() (offsetbasedgraph.Graph method)
merge_alt_using_cigar() (in module offsetbasedgraph.graphcreators)
merge_flanks() (in module offsetbasedgraph.graphcreators)
multiple_alt_loci() (offsetbasedgraph.gene.Gene method)
N
n_edges_in() (offsetbasedgraph.Graph method)
next_position() (offsetbasedgraph.Graph method)
notation() (offsetbasedgraph.Interval method)
(offsetbasedgraph.Position method)
O
offsetbasedgraph (module)
offsetbasedgraph.gene (module)
offsetbasedgraph.graphcreators (module)
offsetbasedgraph.graphutils (module)
P
parse_genes_file() (in module offsetbasedgraph.graphutils)
Position (class in offsetbasedgraph)
prev_position() (offsetbasedgraph.Graph method)
R
remove() (offsetbasedgraph.Graph method)
S
set_graph2() (offsetbasedgraph.Translation method)
summary() (offsetbasedgraph.Graph method)
T
to_file() (offsetbasedgraph.Graph method)
(offsetbasedgraph.Translation method)
translate() (offsetbasedgraph.gene.Gene method)
(offsetbasedgraph.Translation method)
translate_interval() (offsetbasedgraph.Translation method)
translate_position() (offsetbasedgraph.Translation method)
translate_rp() (offsetbasedgraph.Translation method)
translate_single_gene_to_aligned_graph() (in module offsetbasedgraph.graphutils)
translate_subgraph() (offsetbasedgraph.Translation method)
translate_to_fuzzy_interval() (in module offsetbasedgraph.graphutils)
Translation (class in offsetbasedgraph)
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