Welcome to NGCloud’s documentation!

Version: 0.3

Last update: August 16, 2014

Introduction

NGCloud is a Python package to automatically generate readable reports from some common NGS analysis pipeline such as Tuxedo or GATK, and make me not fuck up anything.

Note

If you are looking for the manual for result pages generated by NGCloud, you have come to the wrong place. Result manual for each pipeline is at different repository respectively.

Manual usually ships with the result. If not, please contact the developers to get the right link.

Contents

• Installation
  • Dependencies
  • Install latest stable version
  • Build from source
• Run test
• Build this doc
• Tutorial
  • Quick Start
  • Prepare Your NGS Result for NGCloud
  • Custom a Pipeline from Ground up
  • Extend Builtin Pipeline
  • More on Template Design
• Package API
  • ngcloud.info module
  • ngcloud.report module
  • ngcloud.pipe module
  • ngcloud.util module
• Developing
  • Installation
  • Building frontend CSS/JS
  • Automated building
  • Deploy to PyPI
• Contributing
  • Code Style
  • Version Control
• Change Log
  • 0.3
  • 0.2.1
  • 0.2
  • 0.1.1
  • 0.1
  • 0.0.9