Index

A

alpha_color_to_rgb() (in module neuronpy.util.graphicsutil)

B

bool_to_hoc_double() (in module neuronpy.util.hoctranslate) build_subsets() (neuronpy.db.mongodb.Cell method) (neuronpy.nrnobjects.cell.Cell method)

build_topology() (neuronpy.db.mongodb.Cell method) (neuronpy.nrnobjects.cell.Cell method)

C

Cell (class in neuronpy.db.mongodb) (class in neuronpy.nrnobjects.cell) closest_timing() (in module neuronpy.util.spiketrain) coincidence_factor() (in module neuronpy.util.spiketrain) coincidence_factor_phase() (in module neuronpy.util.spiketrain) coincident_spikes() (in module neuronpy.util.spiketrain)

coincident_spikes_correlogram() (in module neuronpy.util.spiketrain) connect2target() (neuronpy.db.mongodb.Cell method) (neuronpy.nrnobjects.cell.Cell method) create_sections() (neuronpy.db.mongodb.Cell method) (neuronpy.nrnobjects.cell.Cell method) create_synapses() (neuronpy.db.mongodb.Cell method) (neuronpy.nrnobjects.cell.Cell method)

D

define_biophysics() (neuronpy.db.mongodb.Cell method) (neuronpy.nrnobjects.cell.Cell method) define_geometry() (neuronpy.db.mongodb.Cell method) (neuronpy.nrnobjects.cell.Cell method)

dict_to_global() (in module neuronpy.util.hoctranslate)

E

Examples, Demos, and Tutorials

F

filter() (in module neuronpy.util.spiketrain) filter_correlogram() (in module neuronpy.util.spiketrain)

filter_dict() (in module neuronpy.util.dictdb) flatten_from_2d() (in module neuronpy.util.listutil)

G

gauss_1d() (in module neuronpy.math.kernel) get_axes_pad() (neuronpy.graphics.spikeplot.SpikePlot method) get_data_pad() (neuronpy.graphics.spikeplot.SpikePlot method) get_fig() (neuronpy.graphics.spikeplot.SpikePlot method) get_fig_name() (neuronpy.graphics.spikeplot.SpikePlot method) get_figsize() (neuronpy.graphics.spikeplot.SpikePlot method) get_flattened() (in module neuronpy.util.spiketrain) get_frequency() (in module neuronpy.util.spiketrain) get_histogram() (in module neuronpy.util.spiketrain) get_isi_vec() (in module neuronpy.util.spiketrain) get_linestyle() (neuronpy.graphics.spikeplot.SpikePlot method) get_linewidth() (neuronpy.graphics.spikeplot.SpikePlot method) get_marker() (neuronpy.graphics.spikeplot.SpikePlot method) get_markercolor() (neuronpy.graphics.spikeplot.SpikePlot method) get_markeredgewidth() (neuronpy.graphics.spikeplot.SpikePlot method) get_markerscale() (neuronpy.graphics.spikeplot.SpikePlot method) get_mean_isi() (in module neuronpy.util.spiketrain) get_median_isi() (in module neuronpy.util.spiketrain) get_permuted_train() (in module neuronpy.util.spiketrain)

get_phase_correlation() (in module neuronpy.util.spiketrain) get_platform_info() (in module neuronpy.util.platforminfo) get_raster_axes() (neuronpy.graphics.spikeplot.SpikePlot method) get_savefig() (neuronpy.graphics.spikeplot.SpikePlot method) get_spike_bounds() (in module neuronpy.util.spiketrain) get_spikes() (in module neuronpy.util.spiketrain) get_sth() (neuronpy.graphics.spikeplot.SpikePlot method) get_sum() (neuronpy.graphics.spikeplot.SpikePlot method) get_sync_masks() (in module neuronpy.util.spiketrain) get_sync_traits() (in module neuronpy.util.spiketrain) get_variables() (in module neuronpy.util.hocvar) get_variables_from_mechanism() (in module neuronpy.util.hocvar) get_variables_from_object() (in module neuronpy.util.hocvar) get_variables_from_section() (in module neuronpy.util.hocvar) get_variables_from_segment() (in module neuronpy.util.hocvar) Graphics greater_than() (in module neuronpy.util.vartest) greater_than_or_equal() (in module neuronpy.util.vartest)

H

hist_filter() (in module neuronpy.graphics.spiketimehistogram)

I

inrange() (in module neuronpy.util.vartest) is1Dvector() (in module neuronpy.util.vartest) is_art() (neuronpy.db.mongodb.Cell method) (neuronpy.nrnobjects.cell.Cell method)

isbool() (in module neuronpy.util.vartest) isint() (in module neuronpy.util.vartest)

L

list_to_hoc_vector() (in module neuronpy.util.hoctranslate) ListEmptyError

load_param_file() (in module neuronpy.util.paraminit) local_maxima() (in module neuronpy.util.timeseries)

M

match() (in module neuronpy.util.dictdb)

Math

N

netconvecs_to_dict() (in module neuronpy.util.spiketrain) netconvecs_to_listoflists() (in module neuronpy.util.spiketrain) neuronpy.db.mongodb (module) neuronpy.graphics.spikeparams (module) neuronpy.graphics.spikeplot (module) neuronpy.graphics.spikesum (module) neuronpy.graphics.spiketimehistogram (module) neuronpy.math.kernel (module) neuronpy.nrnobjects.cell (module) neuronpy.util.decorators (module) neuronpy.util.dictdb (module) neuronpy.util.graphicsutil (module)

neuronpy.util.hoctranslate (module) neuronpy.util.hocvar (module) neuronpy.util.listutil (module) neuronpy.util.paraminit (module) neuronpy.util.platforminfo (module) neuronpy.util.spiketrain (module) neuronpy.util.timeseries (module) neuronpy.util.vartest (module) nonempty_copy() (in module neuronpy.util.listutil) num_to_hoc_double() (in module neuronpy.util.hoctranslate) numpy_array_to_hoc_vector() (in module neuronpy.util.hoctranslate)

P

parse_args() (in module neuronpy.util.paraminit) permute_vec() (in module neuronpy.util.spiketrain) plot() (neuronpy.graphics.spikesum.SpikeSum method)

plot_spikes() (neuronpy.graphics.spikeplot.SpikePlot method) poisson_train() (in module neuronpy.util.spiketrain) print_spikes() (in module neuronpy.util.spiketrain)

R

read_file() (in module neuronpy.util.spiketrain) read_file_to_vector() (in module neuronpy.util.spiketrain) rectangle_window() (in module neuronpy.math.kernel)

remove_empties() (in module neuronpy.util.listutil) rotateZ() (neuronpy.db.mongodb.Cell method) (neuronpy.nrnobjects.cell.Cell method)

S

set_axes() (neuronpy.graphics.spikesum.SpikeSum method) set_axes_pad() (neuronpy.graphics.spikeplot.SpikePlot method) set_data_pad() (neuronpy.graphics.spikeplot.SpikePlot method) set_fig() (neuronpy.graphics.spikeplot.SpikePlot method) set_fig_name() (neuronpy.graphics.spikeplot.SpikePlot method) set_figsize() (neuronpy.graphics.spikeplot.SpikePlot method) set_linestyle() (neuronpy.graphics.spikeplot.SpikePlot method) set_linewidth() (neuronpy.graphics.spikeplot.SpikePlot method) set_marker() (neuronpy.graphics.spikeplot.SpikePlot method) set_markercolor() (neuronpy.graphics.spikeplot.SpikePlot method) set_markeredgewidth() (neuronpy.graphics.spikeplot.SpikePlot method) set_markerscale() (neuronpy.graphics.spikeplot.SpikePlot method) set_overrides_and_defaults() (in module neuronpy.util.decorators)

set_position() (neuronpy.db.mongodb.Cell method) (neuronpy.nrnobjects.cell.Cell method) set_raster_axes() (neuronpy.graphics.spikeplot.SpikePlot method) set_savefig() (neuronpy.graphics.spikeplot.SpikePlot method) set_sth_ratio() (neuronpy.graphics.spikeplot.SpikePlot method) set_style() (neuronpy.graphics.spikesum.SpikeSum method) set_sum_ratio() (neuronpy.graphics.spikeplot.SpikePlot method) Source Reference SpikeParams (class in neuronpy.graphics.spikeparams) SpikePlot (class in neuronpy.graphics.spikeplot) SpikeSum (class in neuronpy.graphics.spikesum) str_to_hoc_strdef() (in module neuronpy.util.hoctranslate) subset_file() (in module neuronpy.util.spiketrain)

T

triangle() (in module neuronpy.math.kernel)

U

update_xlim() (neuronpy.graphics.spikeplot.SpikePlot method) (neuronpy.graphics.spikesum.SpikeSum method)

Utilities

V

validate_kernel_and_origin() (in module neuronpy.util.spiketrain)