.. contents::



Modules
================

Alignment
------------

.. automodule:: msdas.alignment
    :members: 
    :undoc-members:
    :synopsis: 


Cluster measurements with :mod:`clustering` module
------------------------------------------------------------

.. automodule:: msdas.clustering
    :members:
    :undoc-members:

yeast data to PKN and MIDAS
--------------------------------

.. automodule:: msdas.yeast
    :members:
    :undoc-members:



PKN construction
------------------

.. automodule:: msdas.phosphogrid
    :members:
    :undoc-members:

.. automodule:: msdas.network
    :members:
    :undoc-members:

Reading files with MassSpecReader (readers module)
--------------------------------------------------------

.. automodule:: msdas.readers
    :members:
    :undoc-members:


Handling replicates with MassSpecReplicates (replicates modules)
---------------------------------------------------------------------

.. automodule:: msdas.replicates
    :members:
    :undoc-members:


psites
------------

.. automodule:: msdas.psites
    :members:
    :undoc-members:


tools (modification)
------------------------
 
.. automodule:: msdas.tools
    :members:
    :undoc-members:


annotations
-----------------

.. automodule:: msdas.annotations
    :members:
    :undoc-members: