=============== glySpace Client =============== .. currentmodule:: glypy.io.glyspace This module implements a client for communicating with remote data stores part of the **glySpace** project. Currently, this communicates with the *SPARQL* endpoint hosted by https://glytoucan.org/. The module contains a pre-created instance of :class:`GlySpaceRDFClient` named `client` whose :meth:`get`, :meth:`structure`, :meth:`from_taxon`, and :meth:`structures_with_motif` methods are available as top-level functions of the module. ----------------------------------- RDF Namespaces that are pre-created ----------------------------------- .. code-block:: python NSGlyTouCan = Namespace("http://www.glytoucan.org/glyco/owl/glytoucan#") NSGlycan = Namespace("http://purl.jp/bio/12/glyco/glycan#") NSGlycoinfo = Namespace("http://rdf.glycoinfo.org/glycan/") NSGlycomeDB = Namespace("http://rdf.glycome-db.org/glycan/") NSSKOS = Namespace("http://www.w3.org/2004/02/skos/core#") NSUniprotCore = Namespace("http://purl.uniprot.org/core/") NSUniprotEntity = Namespace("http://purl.uniprot.org/uniprot/") NSTaxonomy = Namespace("http://purl.uniprot.org/taxonomy/") .. autoclass:: glypy.io.glyspace.GlySpaceRDFClient :members: .. automethod:: get .. automethod:: query .. automethod:: __getitem__ .. automethod:: triples .. autoclass:: glypy.io.glyspace.RDFClientBase :members: .. autoclass:: glypy.io.glyspace.ChainFunctionDict :members: :special-members: .. autoclass:: glypy.io.glyspace.BoundURIRef :members: .. autoclass:: glypy.io.glyspace.ReferenceEntity :members: