The ETE tutorial¶
Contents:
- Working With Tree Data Structures
- Trees
- Reading and Writing Newick Trees
- Understanding ETE Trees
- Basic tree attributes
- Browsing trees (traversing)
- Checking the monophyly of attributes within a tree
- Caching tree content for faster lookup operations
- Node annotation
- Comparing Trees
- Modifying Tree Topology
- Pruning trees
- Concatenating trees
- Copying (duplicating) trees
- Solving multifurcations
- Tree Rooting
- Working with branch distances
- The Programmable Tree Drawing Engine
- Phylogenetic Trees
- Clustering Trees
- Phylogenetic XML standards
- Interactive web tree visualization
- Testing Evolutionary Hypothesis
- Dealing with the NCBI Taxonomy database
- SCRIPTS: orthoXML