Index

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__init__() (epydemic.CompartmentedModel method) (epydemic.CompartmentedStochasticDynamics method) (epydemic.CompartmentedSynchronousDynamics method) (epydemic.Dynamics method) (epydemic.EdgeLocus method) (epydemic.NodeLocus method) (epydemic.StochasticDynamics method) (epydemic.SynchronousDynamics method)

__len__() (epydemic.Locus method)

A

addCompartment() (epydemic.CompartmentedModel method) addEvent() (epydemic.CompartmentedModel method)

addLocus() (epydemic.CompartmentedModel method) at_equilibrium() (epydemic.Dynamics method)

B

build() (epydemic.SIR method) (epydemic.SIR_FixedRecovery method) (epydemic.SIS method) (epydemic.SIS_FixedRecovery method)

C

changeCompartment() (epydemic.CompartmentedModel method) COMPARTMENT (epydemic.CompartmentedModel attribute) compartment() (epydemic.CompartmentedModel method) compartmented model of disease

CompartmentedModel (class in epydemic) CompartmentedStochasticDynamics (class in epydemic) CompartmentedSynchronousDynamics (class in epydemic) compartments continuous time

D

DEFAULT_MAX_TIME (epydemic.Dynamics attribute) discrete time do() (epydemic.StochasticDynamics method) (epydemic.SynchronousDynamics method)

draw() (epydemic.Locus method) dynamical state Dynamics (class in epydemic)

E

EdgeLocus (class in epydemic) elements() (epydemic.Locus method) enterHandler() (epydemic.EdgeLocus method) (epydemic.Locus method) (epydemic.NodeLocus method) epydemic (module) event event function

eventDistribution() (epydemic.CompartmentedModel method) (epydemic.CompartmentedSynchronousDynamics method) (epydemic.Dynamics method) eventRateDistribution() (epydemic.CompartmentedStochasticDynamics method) (epydemic.StochasticDynamics method) EVENTS (epydemic.Dynamics attribute) experimentalResults() (epydemic.CompartmentedStochasticDynamics method) (epydemic.CompartmentedSynchronousDynamics method)

I

infect() (epydemic.SIR method) (epydemic.SIR_FixedRecovery method) (epydemic.SIS method) (epydemic.SIS_FixedRecovery method)

INFECTED (epydemic.SIR attribute) (epydemic.SIS attribute) INFECTION_TIME (epydemic.SIR_FixedRecovery attribute) (epydemic.SIS_FixedRecovery attribute) initialCompartmentDistribution() (epydemic.CompartmentedModel method)

L

leaveHandler() (epydemic.EdgeLocus method) (epydemic.Locus method) (epydemic.NodeLocus method)

locus Locus (class in epydemic)

M

markOccupied() (epydemic.CompartmentedModel method)

N

name() (epydemic.Locus method)

network() (epydemic.Dynamics method) NodeLocus (class in epydemic)

O

OCCUPIED (epydemic.CompartmentedModel attribute)

P

P_INFECT (epydemic.SIR attribute) (epydemic.SIS attribute) P_INFECTED (epydemic.SIR attribute) (epydemic.SIS attribute) P_RECOVER (epydemic.SIS attribute)

P_REMOVE (epydemic.SIR attribute) pendingEvents() (epydemic.Dynamics method) posted event postEvent() (epydemic.Dynamics method) process dynamics

R

recover() (epydemic.SIS method) remove() (epydemic.SIR method)

REMOVED (epydemic.SIR attribute) results() (epydemic.CompartmentedModel method) runPendingEvents() (epydemic.Dynamics method)

S

setMaximumTime() (epydemic.Dynamics method) setNetworkPrototype() (epydemic.Dynamics method) setUp() (epydemic.CompartmentedModel method) (epydemic.CompartmentedStochasticDynamics method) (epydemic.CompartmentedSynchronousDynamics method) (epydemic.Dynamics method) (epydemic.SIR_FixedRecovery method) (epydemic.SIS_FixedRecovery method) SI (epydemic.SIR attribute) (epydemic.SIS attribute) SIR (class in epydemic)

SIR_FixedRecovery (class in epydemic) SIS (class in epydemic) SIS_FixedRecovery (class in epydemic) skeletonise() (epydemic.CompartmentedModel method) stochastic dynamics stochastic process StochasticDynamics (class in epydemic) SUSCEPTIBLE (epydemic.SIR attribute) (epydemic.SIS attribute) synchronous dynamics SynchronousDynamics (class in epydemic)

T

T_INFECTED (epydemic.SIR_FixedRecovery attribute) (epydemic.SIS_FixedRecovery attribute)

tearDown() (epydemic.Dynamics method) TIME (epydemic.Dynamics attribute) TIMESTEPS_WITH_EVENTS (epydemic.SynchronousDynamics attribute)