.. epydemic documentation master file, created by
   sphinx-quickstart on Mon Jun 12 20:20:38 2017.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

epydemic: Epidemic simulations on networks in Python
====================================================

.. automodule:: epydemic


Basic concepts and classes
--------------------------

.. toctree::
   :maxdepth: 2

   networkdynamics
   compartmentedmodel
   loci
   

Dynamics
--------

.. toctree::
   :maxdepth: 2

   synchronousdynamics
   stochasticdynamics
   compartmenteddynamics
	      

Reference epidemic processes
----------------------------

.. toctree::
   :maxdepth: 2

   sir
   sis

Process variants
----------------

.. toctree::
   :maxdepth: 2

   sir_fixed_recovery
   sis_fixed_recovery
   

Indices and tables
==================

* :ref:`genindex`
* :ref:`glossary`
* :ref:`bibliography`
* :ref:`search`