Index

A

add() (cookbook.bidirectional_map.BidirectionalMap method) add_file_handler() (in module cookbook.simple_logging) add_logging_to_file() (in module cookbook.simple_logging)

add_to_table() (in module cookbook.pytables_utils) as_slice() (cookbook.interval.Interval method)

B

basic_config() (in module cookbook.simple_logging) BidirectionalMap (class in cookbook.bidirectional_map)

boost_python_dlopen_flags() (in module cookbook.script_basics) Bunch (class in cookbook.bunch)

C

Cache (class in cookbook.persisted_cache) cache_filename() (cookbook.output_context.OutputContext method) cache_in_table() (in module cookbook.pytables_utils) caching_decorator() (cookbook.output_context.OutputContext method) (in module cookbook.workflow) calc_areas() (in module cookbook.venn) calc_error() (in module cookbook.venn) calc_grid_areas() (in module cookbook.venn) calc_separation() (in module cookbook.venn) calc_squareness() (in module cookbook.venn) CalledProcessError chain_permutations() (in module cookbook.permutation) check_equivalence_partition() (in module cookbook.equivalence) check_invariants() (cookbook.rb_interval_tree.rbintervaltree method) (cookbook.rbtree.rbtree method) check_output() (in module cookbook.function_as_task) ChoiceDict (class in cookbook.dicts) cookbook (module) cookbook.bidirectional_map (module) cookbook.bunch (module) cookbook.cache_decorator (module) cookbook.console (module) cookbook.const (module) cookbook.decorate (module) cookbook.dicts (module) cookbook.enum (module) cookbook.equivalence (module)

cookbook.function_as_task (module) cookbook.groupby (module) cookbook.interval (module) cookbook.lru_cache (module) cookbook.named_tuple (module) cookbook.output_context (module) cookbook.permutation (module) cookbook.persisted_cache (module) cookbook.pre_post_conditions (module) cookbook.progress (module) cookbook.pylab_utils (module) cookbook.pytables_utils (module) cookbook.rb_interval_tree (module) cookbook.rbtree (module) cookbook.reverse_dict (module) cookbook.script_basics (module) cookbook.simple_logging (module) cookbook.timer (module) cookbook.venn (module) cookbook.workflow (module) create_format_cycler() (in module cookbook.pylab_utils) create_log_exceptions_decorator() (in module cookbook.simple_logging) create_queue() (in module cookbook.function_as_task) create_svg() (in module cookbook.venn) create_worker_on_queue() (in module cookbook.function_as_task)

D

DecorateInstanceMethod (in module cookbook.decorate) dict_of() (in module cookbook.dicts) DictOf (class in cookbook.dicts) DictOfDicts (class in cookbook.dicts) DictOfInts (class in cookbook.dicts) DictOfLists (class in cookbook.dicts)

DictOfSets (class in cookbook.dicts) discard() (cookbook.bidirectional_map.BidirectionalMap method) do_task() (in module cookbook.function_as_task) dump_cache() (cookbook.cache_decorator.PickledMemoize method) duration() (cookbook.timer.SimpleTimer method)

E

empty() (cookbook.interval.Interval method) end (cookbook.interval.Interval attribute) ensure_dir_exists() (in module cookbook.output_context) (in module cookbook.workflow)

equivalence_enumeration() (in module cookbook.equivalence) equivalence_partition() (in module cookbook.equivalence)

F

file (cookbook.cache_decorator.PickledMemoize attribute) find_bounds() (in module cookbook.venn)

find_closest_intervals() (cookbook.rb_interval_tree.rbintervaltree method) fit_venn4() (in module cookbook.venn)

G

get_fig_size_for_latex() (in module cookbook.pylab_utils)

getTerminalSize() (in module cookbook.console)

H

hull() (cookbook.interval.Interval method)

I

identity_permutation() (in module cookbook.permutation) ImmutableDict (class in cookbook.cache_decorator) initial_bounds() (in module cookbook.venn) initialise_workflow() (in module cookbook.workflow) insert_key() (cookbook.rbtree.rbtree method) insert_node() (cookbook.rbtree.rbtree method)

intersection() (cookbook.interval.Interval method) Interval (class in cookbook.interval) interval_search() (cookbook.rb_interval_tree.rbintervaltree method) invert_permutation() (in module cookbook.permutation) it (cookbook.dicts.ChoiceDict attribute)

K

key (cookbook.rbtree.rbnode attribute)

L

layout_sub_plot() (in module cookbook.pylab_utils) left (cookbook.rbtree.rbnode attribute) load_cache() (cookbook.cache_decorator.PickledMemoize method) log_attributes() (in module cookbook.workflow) log_exception() (in module cookbook.function_as_task) (in module cookbook.script_basics) (in module cookbook.simple_logging) log_exception_traceback() (in module cookbook.simple_logging)

log_options() (in module cookbook.script_basics) log_to_file_and_stderr() (in module cookbook.simple_logging) logger_has_file_handler() (in module cookbook.workflow) LookupDict (class in cookbook.reverse_dict) lru_cache() (in module cookbook.lru_cache)

M

map1 (cookbook.bidirectional_map.BidirectionalMap attribute) map2 (cookbook.bidirectional_map.BidirectionalMap attribute) max (cookbook.rb_interval_tree.rbintervalnode attribute)

maximum() (cookbook.rbtree.rbtree method) mid_points() (in module cookbook.venn) minimum() (cookbook.rbtree.rbtree method)

N

nil (cookbook.rbtree.rbtree attribute)

O

output_cached_method() (in module cookbook.workflow) output_context (in module cookbook.output_context) output_file() (in module cookbook.workflow)

OutputContext (class in cookbook.output_context) overlap() (cookbook.interval.Interval method)

P

p (cookbook.rbtree.rbnode attribute) permute() (in module cookbook.permutation) permute_yield() (in module cookbook.permutation) persist() (cookbook.persisted_cache.PersistedCache method) persist_all_in() (in module cookbook.persisted_cache) PersistedCache (class in cookbook.persisted_cache) pickled_method (class in cookbook.cache_decorator)

PickledMemoize (class in cookbook.cache_decorator) prepend_to_environment_variable() (in module cookbook.script_basics) preserve_dlopenflags() (in module cookbook.script_basics) proper_subset() (cookbook.interval.Interval method) pylab_context_ioff() (in module cookbook.pylab_utils) pylab_ioff() (in module cookbook.pylab_utils)

R

rbintervalnode (class in cookbook.rb_interval_tree) rbintervaltree (class in cookbook.rb_interval_tree) rbnode (class in cookbook.rbtree) rbtree (class in cookbook.rbtree) red (cookbook.rbtree.rbnode attribute) remove() (cookbook.bidirectional_map.BidirectionalMap method)

restart() (cookbook.timer.SimpleTimer method) ReverseDict (class in cookbook.reverse_dict) right (cookbook.rbtree.rbnode attribute) root (cookbook.rbtree.rbtree attribute) run_as_subprocess() (in module cookbook.function_as_task)

S

search() (cookbook.rbtree.rbtree method) separation() (cookbook.interval.Interval method) set_rcParams_for_latex() (in module cookbook.pylab_utils) setUp() (cookbook.output_context.OutputContext method) setup_logging() (in module cookbook.script_basics) show_environment() (in module cookbook.script_basics) simple_colours (in module cookbook.pylab_utils)

simple_decorator() (in module cookbook.decorate) SimpleTimer (class in cookbook.timer) singleton() (cookbook.interval.Interval method) sleep() (in module cookbook.function_as_task) start (cookbook.interval.Interval attribute) subset() (cookbook.interval.Interval method) subtree_interval() (cookbook.rb_interval_tree.rbintervalnode method)

T

test_tree() (in module cookbook.rbtree)

Timer (class in cookbook.timer)

U

UniqueIds (class in cookbook.dicts)

use_handler() (in module cookbook.simple_logging)

V

version_string() (in module cookbook)

violin_plot() (in module cookbook.pylab_utils)

W

write_tree_as_dot() (in module cookbook.rbtree)

Z

zero_in() (cookbook.interval.Interval method)