Index

A

A() (in module chempy.electrolytes) all_non_negative() (chempy.util.arithmeticdict.ArithmeticDict method) all_prod_stoich() (chempy.chemistry.Reaction method) all_prod_stoichs() (chempy.chemistry.ReactionSystem method) all_reac_stoich() (chempy.chemistry.Reaction method) all_reac_stoichs() (chempy.chemistry.ReactionSystem method) allclose() (in module chempy.units) argument_names (chempy.kinetics.rates.ArrheniusMassAction attribute) (chempy.kinetics.rates.EyringMassAction attribute) (chempy.kinetics.rates.MassAction attribute) (chempy.thermodynamics.expressions.GibbsEquilibriumConstant attribute) ArithmeticDict (class in chempy.util.arithmeticdict) arrhenius_equation() (in module chempy.kinetics.arrhenius) ArrheniusMassAction (class in chempy.kinetics.rates)

ArrheniusParam (class in chempy.kinetics.arrhenius) ArrheniusParamWithUnits (class in chempy.kinetics.arrhenius) as_mass_action() (chempy.kinetics.rates.MassAction method) as_per_substance_array() (chempy.chemistry.ReactionSystem method) as_per_substance_dict() (chempy.chemistry.ReactionSystem method) as_per_substance_html_table() (in module chempy.printing) as_reactions() (chempy.chemistry.Equilibrium method) as_substance_index() (chempy.chemistry.ReactionSystem method) atomic_number() (in module chempy.util.parsing) attrs (chempy.chemistry.Substance attribute) avg_params() (in module chempy.util.regression)

B

B() (in module chempy.electrolytes) Backend (class in chempy.units) balance_stoichiometry() (in module chempy.chemistry)

bimolecular_html_table() (chempy.chemistry.ReactionSystem method) binary_irrev() (in module chempy.kinetics.integrated) binary_rev() (in module chempy.kinetics.integrated)

C

cancel() (chempy.chemistry.Equilibrium method) charge (chempy.chemistry.Substance attribute) charge_neutrality_violation() (chempy.chemistry.Reaction method) check_all_integral() (chempy.chemistry.Reaction method) check_all_positive() (chempy.chemistry.Reaction method) check_any_effect() (chempy.chemistry.Reaction method) check_balance() (chempy.chemistry.ReactionSystem method) check_duplicate() (chempy.chemistry.ReactionSystem method) check_duplicate_names() (chempy.chemistry.ReactionSystem method) check_substance_keys() (chempy.chemistry.ReactionSystem method) chempy (module) chempy.arrhenius (module) chempy.chemistry (module) chempy.debye_huckel (module) chempy.einstein_smoluchowski (module) chempy.electrolytes (module) chempy.equilibria (module) chempy.eyring (module) chempy.henry (module) chempy.kinetics (module) chempy.kinetics.arrhenius (module) chempy.kinetics.eyring (module) chempy.kinetics.integrated (module) chempy.kinetics.ode (module) chempy.kinetics.rates (module) chempy.kinetics.tests (module) chempy.kinetics.tests.test_integrated (module) chempy.kinetics.tests.test_ode (module) chempy.printing (module) chempy.properties (module) chempy.properties.debye_huckel_radii (module) chempy.properties.sulfuric_acid_density_myhre_1998 (module) chempy.properties.tests (module) chempy.properties.tests.test_sulfuric_acid_density_myhre_1998 (module)

chempy.properties.tests.test_water_density_tanaka_2001 (module) chempy.properties.tests.test_water_diffusivity_holz_2000 (module) chempy.properties.tests.test_water_permittivity_bradley_pitzer_1979 (module) chempy.properties.water_density_tanaka_2001 (module) chempy.properties.water_diffusivity_holz_2000 (module) chempy.properties.water_permittivity_bradley_pitzer_1979 (module) chempy.symbolic (module) chempy.thermodynamics (module) chempy.thermodynamics.expressions (module) chempy.units (module) chempy.util (module) chempy.util.arithmeticdict (module) chempy.util.bkh (module) chempy.util.deprecation (module) chempy.util.graph (module) chempy.util.parsing (module) chempy.util.pyutil (module) chempy.util.regression (module) chempy.util.stoich (module) chempy.util.table (module) chempy.util.testing (module) chempy.util.tests (module) chempy.util.tests.test_arithmeticdict (module) chempy.util.tests.test_graph (module) chempy.util.tests.test_parsing (module) chempy.util.tests.test_pyutil (module) chempy.util.tests.test_stoich (module) chempy.util.tests.test_table (module) ChemPyDeprecationWarning composition_balance_vectors() (chempy.chemistry.ReactionSystem method) composition_conservation() (chempy.equilibria.EqSystem method) composition_keys() (chempy.chemistry.Substance static method) composition_violation() (chempy.chemistry.Reaction method) copy() (chempy.chemistry.Reaction method) (chempy.util.arithmeticdict.ArithmeticDict method)

D

davies_activity_product() (in module chempy.electrolytes) davies_log_gamma() (in module chempy.electrolytes) dCdt() (in module chempy.kinetics.ode) decompose_yields() (in module chempy.util.stoich) default_unit_in_registry() (in module chempy.units) defaultkeydict (class in chempy.util.pyutil) defaultnamedtuple() (in module chempy.util.pyutil)

Density (class in chempy.kinetics.tests.test_ode) density_from_concentration() (in module chempy.properties.sulfuric_acid_density_myhre_1998) deprecated() (in module chempy.util.pyutil) Deprecation (class in chempy.util.deprecation) dimensionality() (chempy.chemistry.Equilibrium method) dimerization_irrev() (in module chempy.kinetics.integrated) dissolved() (chempy.equilibria.EqSystem method)

E

electrical_mobility_from_D() (in module chempy.einstein_smoluchowski) eliminate() (chempy.chemistry.Equilibrium static method) eq_constants() (chempy.equilibria.EqSystem method) EqExpr (class in chempy.thermodynamics.expressions) EqSystem (class in chempy.equilibria) equation_as_string() (chempy.kinetics.arrhenius.ArrheniusParam method) (chempy.kinetics.eyring.EyringParam method) Equilibrium (class in chempy.chemistry) equilibrium_constant() (chempy.chemistry.Equilibrium method) equilibrium_quotient() (in module chempy.chemistry)

equilibrium_quotients() (chempy.equilibria.EqSystem method) extended_activity_product() (in module chempy.electrolytes) extended_log_gamma() (in module chempy.electrolytes) ExtendedDebyeHuckelActivityProduct (class in chempy.electrolytes) eyring_equation() (in module chempy.kinetics.eyring) EyringMassAction (class in chempy.kinetics.rates) EyringParam (class in chempy.kinetics.eyring) EyringParamWithUnits (class in chempy.kinetics.eyring)

F

fit_arrhenius_equation() (in module chempy.kinetics.arrhenius) fit_eyring_equation() (in module chempy.kinetics.eyring) format() (chempy.kinetics.arrhenius.ArrheniusParam method) (chempy.kinetics.eyring.EyringParam method) format_string() (in module chempy.units) formula_to_composition() (in module chempy.util.parsing) formula_to_html() (in module chempy.util.parsing)

formula_to_latex() (in module chempy.util.parsing) formula_to_unicode() (in module chempy.util.parsing) from_fit_of_data() (chempy.kinetics.arrhenius.ArrheniusParam class method) from_formula() (chempy.chemistry.Species class method) (chempy.chemistry.Substance class method) from_string() (chempy.chemistry.Reaction class method) (chempy.chemistry.ReactionSystem class method)

G

get_c_at_T_and_P() (chempy.henry.Henry method) get_coeff_mtx() (in module chempy.util.stoich) get_constant_symbols() (in module chempy.symbolic) get_derived_unit() (in module chempy.units) get_kH_at_T() (chempy.henry.Henry method) get_neqsys() (chempy.equilibria.EqSystem method) get_neqsys_chained_conditional() (chempy.equilibria.EqSystem method)

get_neqsys_conditional_chained() (chempy.equilibria.EqSystem method) get_neqsys_static_conditions() (chempy.equilibria.EqSystem method) get_odesys() (in module chempy.kinetics.ode) get_P_at_T_and_c() (chempy.henry.Henry method) get_physical_quantity() (in module chempy.units) get_radii() (in module chempy.properties.debye_huckel_radii) GibbsEquilibriumConstant (class in chempy.thermodynamics.expressions)

H

has_precipitates() (chempy.chemistry.Reaction method) Henry (class in chempy.henry) Henry_H_at_T() (in module chempy.henry)

HenryWithUnits (class in chempy.henry) html() (chempy.chemistry.Reaction method) (chempy.printing.Table method) html_arrow (chempy.chemistry.Equilibrium attribute) (chempy.chemistry.Reaction attribute)

I

inspect() (chempy.util.deprecation.Deprecation class method) integration_with_sliders() (in module chempy.util.bkh) ionic_strength() (in module chempy.electrolytes)

irls() (in module chempy.util.regression) is_unitless() (in module chempy.units) isclose() (chempy.util.arithmeticdict.ArithmeticDict method)

K

K() (chempy.chemistry.Equilibrium method) keys() (chempy.chemistry.Reaction method)

kw (chempy.kinetics.rates.RateExpr attribute) (chempy.kinetics.tests.test_ode.Density attribute) (chempy.thermodynamics.expressions.EqExpr attribute)

L

latex() (chempy.chemistry.Reaction method) latex_arrow (chempy.chemistry.Equilibrium attribute) (chempy.chemistry.Reaction attribute) latex_of_unit() (in module chempy.units) law_of_mass_action_rates() (in module chempy.kinetics.ode) least_squares() (in module chempy.util.regression)

limiting_activity_product() (in module chempy.electrolytes) limiting_log_gamma() (in module chempy.electrolytes) LimitingDebyeHuckelActivityProduct (class in chempy.electrolytes) linspace() (in module chempy.units) logspace_from_lin() (in module chempy.units)

M

magnitude() (in module chempy.units) mass (chempy.chemistry.Substance attribute) mass_balance_violation() (chempy.chemistry.Reaction method) mass_fractions() (in module chempy.chemistry) mass_from_composition() (in module chempy.util.parsing)

MassAction (class in chempy.kinetics.rates) memoize() (in module chempy.util.pyutil) mk_Radiolytic() (in module chempy.kinetics.rates) molar_mass() (chempy.chemistry.Substance method)

N

net_stoich() (chempy.chemistry.Reaction method) net_stoichs() (chempy.chemistry.ReactionSystem method) NoConvergence non_precip_rids() (chempy.equilibria.EqSystem method) non_precipitate_stoich() (chempy.chemistry.Reaction method)

nr (chempy.chemistry.ReactionSystem attribute) ns (chempy.chemistry.ReactionSystem attribute) number_to_scientific_html() (in module chempy.util.parsing) number_to_scientific_latex() (in module chempy.util.parsing) number_to_scientific_unicode() (in module chempy.util.parsing)

O

obeys_charge_neutrality() (chempy.chemistry.ReactionSystem method) obeys_mass_balance() (chempy.chemistry.ReactionSystem method) order() (chempy.chemistry.Reaction method)

other_phase_species_idxs() (chempy.equilibria.EqSystem method) other_properties (chempy.chemistry.Substance attribute)

P

param_char (chempy.chemistry.Equilibrium attribute) (chempy.chemistry.Reaction attribute) parameter_keys (chempy.kinetics.rates.ArrheniusMassAction attribute) (chempy.kinetics.tests.test_ode.Density attribute) (chempy.thermodynamics.expressions.GibbsEquilibriumConstant attribute) params() (chempy.chemistry.ReactionSystem method) per_substance_varied() (chempy.chemistry.ReactionSystem method) phase_transfer_reaction_idxs() (chempy.equilibria.EqSystem method) plot_errors() (chempy.equilibria.EqSystem method) plot_fit() (in module chempy.util.regression)

precipitate (chempy.chemistry.Species attribute) precipitate_factor() (chempy.chemistry.Equilibrium method) precipitate_rxn_idxs (chempy.equilibria.EqSystem attribute) precipitate_stoich() (chempy.chemistry.Reaction method) precipitate_substance_idxs (chempy.equilibria.EqSystem attribute) pseudo_irrev() (in module chempy.kinetics.integrated) pseudo_rev() (in module chempy.kinetics.integrated)

Q

Q() (chempy.chemistry.Equilibrium method)

R

Radiolytic (in module chempy.kinetics.rates) RadiolyticBase (class in chempy.kinetics.rates) rate() (chempy.chemistry.Reaction method) rate_coeff() (chempy.kinetics.rates.ArrheniusMassAction method) (chempy.kinetics.rates.EyringMassAction method) (chempy.kinetics.rates.MassAction method) rate_expr() (chempy.chemistry.Reaction method) RateExpr (class in chempy.kinetics.rates) rates() (chempy.chemistry.ReactionSystem method) Reaction (class in chempy.chemistry) ReactionSystem (class in chempy.chemistry) render_tex_to_pdf() (in module chempy.util.table)

requires (class in chempy.util.testing) root() (chempy.equilibria.EqSystem method) roots() (chempy.equilibria.EqSystem method) rsys2dot() (in module chempy.util.graph) rsys2graph() (in module chempy.util.graph) rsys2pdf_table() (in module chempy.util.table) rsys2table() (in module chempy.util.table) rsys2tablines() (in module chempy.util.table) rxn (chempy.kinetics.rates.RateExpr attribute)

S

Solute (class in chempy.chemistry) solve() (chempy.equilibria.EqSystem method) Species (class in chempy.chemistry) stoichs() (chempy.chemistry.ReactionSystem method) stoichs_constants() (chempy.equilibria.EqSystem method) str_arrow (chempy.chemistry.Equilibrium attribute) (chempy.chemistry.Reaction attribute) string() (chempy.chemistry.Reaction method)

subclass_from_callback() (chempy.kinetics.rates.MassAction class method) (chempy.kinetics.rates.RateExpr class method) Substance (class in chempy.chemistry) substance_labels() (chempy.equilibria.EqSystem method) substance_names() (chempy.chemistry.ReactionSystem method) substance_participation() (chempy.chemistry.ReactionSystem method) sulfuric_acid_density() (in module chempy.properties.sulfuric_acid_density_myhre_1998)

T

Table (class in chempy.printing) test_ArithmeticDict() (in module chempy.util.tests.test_arithmeticdict) test_ArithmeticDict_add() (in module chempy.util.tests.test_arithmeticdict) test_ArithmeticDict_all_non_negative() (in module chempy.util.tests.test_arithmeticdict) test_ArithmeticDict_div() (in module chempy.util.tests.test_arithmeticdict) test_ArithmeticDict_div_float() (in module chempy.util.tests.test_arithmeticdict) test_ArithmeticDict_floordiv() (in module chempy.util.tests.test_arithmeticdict) test_ArithmeticDict_iadd() (in module chempy.util.tests.test_arithmeticdict) test_ArithmeticDict_idiv() (in module chempy.util.tests.test_arithmeticdict) test_ArithmeticDict_imul() (in module chempy.util.tests.test_arithmeticdict) test_ArithmeticDict_isclose() (in module chempy.util.tests.test_arithmeticdict) test_ArithmeticDict_isub() (in module chempy.util.tests.test_arithmeticdict) test_ArithmeticDict_mul() (in module chempy.util.tests.test_arithmeticdict) test_ArithmeticDict_sub() (in module chempy.util.tests.test_arithmeticdict) test_atomic_number() (in module chempy.util.tests.test_parsing) test_binary_irrev() (in module chempy.kinetics.tests.test_integrated) test_binary_rev() (in module chempy.kinetics.tests.test_integrated) test_decompose_yields_1() (in module chempy.util.tests.test_stoich) test_decompose_yields_2() (in module chempy.util.tests.test_stoich) test_decompose_yields__units_1() (in module chempy.util.tests.test_stoich) test_defaultkeydict() (in module chempy.util.tests.test_pyutil) test_defaultnamedtuple() (in module chempy.util.tests.test_pyutil) test_density_from_concentration() (in module chempy.properties.tests.test_sulfuric_acid_density_myhre_1998) test_density_from_concentration__units() (in module chempy.properties.tests.test_sulfuric_acid_density_myhre_1998) test_formula_to_composition() (in module chempy.util.tests.test_parsing) test_formula_to_html() (in module chempy.util.tests.test_parsing) test_formula_to_latex() (in module chempy.util.tests.test_parsing) test_formula_to_unicoce() (in module chempy.util.tests.test_parsing) test_get_coeff_mtx() (in module chempy.util.tests.test_stoich) test_get_ode__ArrheniusParam() (in module chempy.kinetics.tests.test_ode) test_get_ode__Radiolytic() (in module chempy.kinetics.tests.test_ode)

test_get_ode__Radiolytic__substitutions() (in module chempy.kinetics.tests.test_ode) test_get_ode__Radiolytic__substitutions__units() (in module chempy.kinetics.tests.test_ode) test_get_ode__Radiolytic__units() (in module chempy.kinetics.tests.test_ode) test_get_ode__TPoly() (in module chempy.kinetics.tests.test_ode) test_get_odesys_1() (in module chempy.kinetics.tests.test_ode) test_get_odesys_2() (in module chempy.kinetics.tests.test_ode) test_get_odesys_3() (in module chempy.kinetics.tests.test_ode) test_get_odesys__with_units() (in module chempy.kinetics.tests.test_ode) test_mass_from_composition() (in module chempy.util.tests.test_parsing) test_mass_from_composition__formula() (in module chempy.util.tests.test_parsing) test_number_to_scientific_html() (in module chempy.util.tests.test_parsing) test_ode_with_global_parameters() (in module chempy.kinetics.tests.test_ode) test_pseudo_irrev() (in module chempy.kinetics.tests.test_integrated) test_pseudo_rev() (in module chempy.kinetics.tests.test_integrated) test_relative_atomic_masses() (in module chempy.util.tests.test_parsing) test_rsys2dot() (in module chempy.util.tests.test_graph) test_rsys2graph() (in module chempy.util.tests.test_graph) test_rsys2pdf_table() (in module chempy.util.tests.test_table) test_rsys2pdf_table_no_output_dir() (in module chempy.util.tests.test_table) test_rsys2table() (in module chempy.util.tests.test_table) test_rsys2tablines() (in module chempy.util.tests.test_table) test_SpecialFraction() (in module chempy.kinetics.tests.test_ode) test_SpecialFraction_with_units() (in module chempy.kinetics.tests.test_ode) test_sulfuric_acid_density() (in module chempy.properties.tests.test_sulfuric_acid_density_myhre_1998) test_to_reaction() (in module chempy.util.tests.test_parsing) test_water_density() (in module chempy.properties.tests.test_water_density_tanaka_2001) test_water_permittivity() (in module chempy.properties.tests.test_water_permittivity_bradley_pitzer_1979) test_water_permittivity__units() (in module chempy.properties.tests.test_water_permittivity_bradley_pitzer_1979) test_water_self_diffusion_coefficient() (in module chempy.properties.tests.test_water_diffusivity_holz_2000) to_reaction() (in module chempy.util.parsing) to_unitless() (in module chempy.units)

U

unicode() (chempy.chemistry.Reaction method) unicode_arrow (chempy.chemistry.Equilibrium attribute) (chempy.chemistry.Reaction attribute) unimolecular_html_table() (chempy.chemistry.ReactionSystem method) unit_of() (in module chempy.units)

unit_registry_from_human_readable() (in module chempy.units) unit_registry_to_human_readable() (in module chempy.units) unitless_in_registry() (in module chempy.units) upper_conc_bounds() (chempy.equilibria.EqSystem method)

W

water_density() (in module chempy.properties.water_density_tanaka_2001) water_permittivity() (in module chempy.properties.water_permittivity_bradley_pitzer_1979)

water_self_diffusion_coefficient() (in module chempy.properties.water_diffusivity_holz_2000)