aquaduct.apps.valvecore module

version_nice()[source]
class ValveConfig[source]

Bases: object, aquaduct.apps.valvecore.ConfigSpecialNames

__init__()[source]
static common_config_names()[source]
static common_traj_data_config_names()[source]
static global_name()[source]
static cluster_name()[source]
static recluster_name()[source]
static recursive_clusterization_name()[source]
static recursive_threshold_name()[source]
static smooth_name()[source]
stage_names(nr=None)[source]
get_common_traj_data(stage)[source]
get_global_options()[source]
get_stage_options(stage)[source]
get_cluster_options(section_name=None)[source]
get_recluster_options()[source]
get_smooth_options()[source]
get_default_config()[source]
load_config(filename)[source]
save_config_stream(fs)[source]
save_config(filename)[source]
get_general_comment(section)[source]
dump_config(dump_template=False)[source]
_ValveConfig__make_options_nt(input_options)
valve_begin()[source]
valve_end()[source]
valve_load_config(filename, config)[source]
valve_read_trajectory(top, traj, frames_window=None)[source]
valve_exec_stage(stage, config, stage_run, reader=None, no_io=False, run_status=None, **kwargs)[source]
stage_I_run(config, options, reader=None, **kwargs)[source]
stage_II_run(config, options, reader=None, all_res=None, res_ids_in_object_over_frames=None, **kwargs)[source]
stage_III_run(config, options, paths=None, reader=None, **kwargs)[source]
stage_IV_run(config, options, spaths=None, center_of_system=None, reader=None, **kwargs)[source]
stage_V_run(config, options, spaths=None, paths=None, inls=None, ctypes=None, **kwargs)[source]
stage_VI_run(config, options, reader=None, spaths=None, inls=None, ctypes=None, master_paths=None, master_paths_smooth=None, **kwargs)[source]
aquaduct_version_nice()

Returns aquaduct version number as nicely formatted string.

Returns:string composed on the basis of the number returned by version().
Return type:str