aquaduct.apps.valvecore module

version_nice()

class ValveConfig

Bases: object, aquaduct.apps.valvecore.ConfigSpecialNames

__init__()

static common_config_names()

static common_traj_data_config_names()

static global_name()

static cluster_name()

static recluster_name()

static recursive_clusterization_name()

static recursive_threshold_name()

static smooth_name()

stage_names(nr=None)

get_common_traj_data(stage)

get_global_options()

get_stage_options(stage)

get_cluster_options(section_name=None)

get_recluster_options()

get_smooth_options()

get_default_config()

load_config(filename)

save_config_stream(fs)

save_config(filename)

get_general_comment(section)

dump_config(dump_template=False)

_ValveConfig__make_options_nt(input_options)

valve_begin()

valve_end()

valve_load_config(filename, config)

valve_read_trajectory(top, traj, frames_window=None)

valve_exec_stage(stage, config, stage_run, reader=None, no_io=False, run_status=None, **kwargs)

stage_I_run(config, options, reader=None, **kwargs)

stage_II_run(config, options, reader=None, all_res=None, res_ids_in_object_over_frames=None, **kwargs)

stage_III_run(config, options, paths=None, reader=None, **kwargs)

stage_IV_run(config, options, spaths=None, center_of_system=None, reader=None, **kwargs)

stage_V_run(config, options, spaths=None, paths=None, inls=None, ctypes=None, **kwargs)

stage_VI_run(config, options, reader=None, spaths=None, inls=None, ctypes=None, master_paths=None, master_paths_smooth=None, **kwargs)

aquaduct_version_nice()

Returns aquaduct version number as nicely formatted string.

Returns:string composed on the basis of the number returned by version(). Return type:str