Welcome to AGFusion’s documentation!

Author:Charlie Murphy
Contact:murphy.charlesj@gmail.com
Source code:GitHub
License:MIT
Packages:PyPI
Article:Pending...

For a given gene fusion, AGFusion will predict the cDNA, CDS, and protein sequences resulting from fusion of all combinations of transcripts and save them to fasta files. AGFusion can also plot the protein domain architecture of the fusion transcripts. Currently, only PFAM domains are used to annotate gene fusions. CDS and protein sequences are only outputted for fusions that can form a protein.

Python API

Contents:

Indices and tables