Welcome to OpenElectrophy’s documentation!


OpenElectrophy is a python module for electrophysioly data analysis (intra- and extra-cellular). OpenElectrophy is build on top of Neo :

  • It includes the powerful Neo IO that can read a quantity of data formats (Plexon, NeuroExplorer, Spike2, TDT, Axon, BlackRock, ...)
  • neo object ready for analyses (AnalogSIgnal, SpikeTrain, RecordingChannel, Segment, Block ...)

For new user a main interest in OpenElectrophy is the spike sorting tool chain. See Spike sorting.

But OpenElectrophy also provide:
  • A GUI for exploring dataset
  • A complete offline spikesorting tool chain = GUI and/or command line.
  • A timefrequency toolbox = fast wavelet scalogram plotting + transient oscillation in LFP detection.
  • Viewers for neo objects.
  • A database for storage.
_images/signal_and_timefreq.png _images/treeview_1.png _images/signal_params.png


Indices and tables