ecodbtaxstat: gives taxonomic rank frequency of a given ecopcr database¶
The ecodbtaxstat command requires an ecopcr database and a taxonomic rank
(specified by the --rank option, default species). The command outputs first
the total number of sequence records in the database having taxonomic information at this rank,
and then the number of sequence records for each value of this rank.
ecodbtaxstat specific option¶
-
--rank=<TAXONOMIC_RANK>¶ The taxonomic rank at which frequencies have to be computed. Possible values are:
- class
- family
- forma
- genus
- infraclass
- infraorder
- kingdom
- order
- parvorder
- phylum
- species (default)
- species group
- species subgroup
- subclass
- subfamily
- subgenus
- subkingdom
- suborder
- subphylum
- subspecies
- subtribe
- superclass
- superfamily
- superkingdom
- superorder
- superphylum
- tribe
- varietas