.. automodule:: obijoinpairedend

    :py:mod:`obijoinpairedend` specific options
    -------------------------------------------

    .. cmdoption::      -r <FILENAME>, --reverse-reads=<FILENAME>
                        
        Filename points to the file containing the reverse reads.

    .. include:: ../optionsSet/inputformat.txt

    .. include:: ../optionsSet/outputformat.txt

    .. include:: ../optionsSet/defaultoptions.txt