.. automodule:: obiannotate

   .. include:: ../optionsSet/sequenceEdit.txt
   
   .. include:: ../optionsSet/sequenceFilter.txt
   
   .. include:: ../optionsSet/taxonomyFilter.txt
   
   .. include:: ../optionsSet/inputformat.txt
   
   .. include:: ../optionsSet/outputformat.txt

   .. include:: ../optionsSet/defaultoptions.txt
   
   :py:mod:`obiannotate` added sequence attributes
   -----------------------------------------------

      .. hlist::
           :columns: 3

           - :doc:`seq_length <../attributes/seq_length>`
           - :doc:`seq_rank <../attributes/seq_rank>`
           - :doc:`cluster <../attributes/cluster>`
           - :doc:`scientific_name <../attributes/scientific_name>`
           - :doc:`taxid <../attributes/taxid>`
           - :doc:`rank <../attributes/rank>`
           - :doc:`family <../attributes/family>`
           - :doc:`family_name <../attributes/family_name>`
           - :doc:`genus <../attributes/genus>`
           - :doc:`genus_name <../attributes/genus_name>`       
           - :doc:`order <../attributes/order>`
           - :doc:`order_name <../attributes/order_name>`
           - :doc:`species <../attributes/species>`
           - :doc:`species_name <../attributes/species_name>`