Tools Documentation

This is the documentation for the command-line tools provided by the MetagenomeDB toolkit.

Adding and modifying objects:

• mdb-add: Adding objects
• Annotating objects (mdb-annotate)
• EMPTY (mdb-remove)

Importing and exporting sequences:

• EMPTY (mdb-import-sequences)
• EMPTY (mdb-export-sequences)

Importing sequence alignments:

• mdb-import-BLAST-alignments: Importing BLAST alignment results
• EMPTY (mdb-import-FASTA-alignments)
• EMPTY (mdb-import-ACE-alignments)

Importing sequence annotations:

• EMPTY (mdb-import-CRISPRfinder-annotations)