Welcome to Kiwi!

The Kiwi module combines geneset analyses with biological networks to visualize the interactions between genesets that are significant in a given biological system. Users can find Kiwi at the Python Package Index (PyPI) and it can be accessed as an online tool in the BioMet Toolbox. Developers can find Kiwi in GitHub.

• Installation
  • Requirements
  • Package installation
  • Package update
• Tutorial
  • The goal - Why Kiwi?
  • Preparing the data
  • Running Kiwi
  • Understanding the results
  • What next?
• Reference manual
  • Arguments
  • Implementation
• API Documentation
  • classes
  • functions

Citation

Please cite this paper within a publication that makes use of Kiwi:

• Väremo L., Gatto F. and Nielsen J. Kiwi: a tool for integration and visualization of network topology and gene-set analysis, BMC Bioinformatics 2014, 15:408

Contact information

To contact the developers for info or bug report: kiwi [at] sysbio [dot] se.

This project was carried out at Systems and Synthetic Biology at Chalmers University of Technology, Gothenburg, Sweden. The developers wish to thank the Chalmers Foundation and the Alice and Knut Wallenberg Foundation for supporting this project.

Indices and tables

• Index
• Module Index
• Search Page