ggbase: infrastructure for the genetics of gene expression

The module reflects the content of the R/Bioconductor package GGBase. It defines Python-level classes for the R/S4 classes, and gives otherwise access to R-level commands the usual rpy2:robjects way.

The class inheritance diagram is useful for having an overview of how (biological) strings are modelled.

A module to model the GGtools library in Bioconductor

Copyright 2009 - Laurent Gautier

class bioc.ggbase.GeneSymbol

class bioc.ggbase.SmlSet

exprs

Python representation of an R function such as the character ‘.’ is replaced with ‘_’ whenever present in the R argument name.

getalleles(rsid)

smlenv

Python representation of an R function such as the character ‘.’ is replaced with ‘_’ whenever present in the R argument name.

smlist

Python representation of an R function such as the character ‘.’ is replaced with ‘_’ whenever present in the R argument name.

snps(chrnum)

bioc.ggbase.ggbase_conversion(robj)

ggtools: software and data for genetical genomics

The module reflects the content of the R/Bioconductor package GGtools. It defines Python-level classes for the R/S4 classes, and gives otherwise access to R-level commands the usual rpy2:robjects way.

The class inheritance diagram is useful for having an overview of how (biological) strings are modelled.

A module to model the GGtools library in Bioconductor

Copyright 2009 - Laurent Gautier

bioc.ggtools.ggtools_conversion(robj)