Railroadtracks

A toolkit to connect (D|R)NA-Seq steps

• Introduction
• Installation
  • Requirements
  • Installation
• Tutorial
  • Creating a project
  • Displaying a project
  • Working with model environments
  • Aligning reads using bowtie2
  • Task execution
  • The graph in the dependency graph
  • Building a full pipeline
  • Handling results (target assets)
• Cookbook
  • Environment
  • Project
  • TaskSet
  • TaskSetGraph
• Recipes
  • Steps and assets
  • Setup
  • Simple recipe
  • Loops, nested loops, and many variants
  • Docstrings
  • Troubleshooting
• Model
  • Overview
  • Activities
  • Inheritance diagram
  • Docstrings
• Extending the framework
  • Writing custom steps
  • Unified execution
• Unified execution
  • Version number
  • Running a step
  • Using a scheduler/Queueing system
  • Docstrings
• Persistence

Index and tables

• Index
• Module Index
• Search Page