Index

_ | A | B | C | D | E | F | G | I | L | M | N | P | R | S | T | U | V | W

_

__init__() (pyteomics.mass.Composition method)

A

amino_acid_composition() (in module pyteomics.parser)

B

by_name() (pyteomics.mass.Unimod method)

by_title() (pyteomics.mass.Unimod method)

C

calculate_mass() (in module pyteomics.mass)
calculate_RT() (in module pyteomics.achrom)

charge() (in module pyteomics.electrochem)
cleave() (in module pyteomics.parser)

D

decoy_db() (in module pyteomics.fasta)

decoy_sequence() (in module pyteomics.fasta)

E

expasy_rules (in module pyteomics.parser)

F

fast_mass() (in module pyteomics.mass)

fast_valid() (in module pyteomics.parser)

G

get_by_id() (in module pyteomics.mzid)
get_RCs() (in module pyteomics.achrom)

get_RCs_vary_lcp() (in module pyteomics.achrom)

I

is_modX() (in module pyteomics.parser)
is_term_mod() (in module pyteomics.parser)
isoforms() (in module pyteomics.parser)

isotopic_composition_abundance() (in module pyteomics.mass)

iterfind() (in module pyteomics.mzid)

(in module pyteomics.mzml)
(in module pyteomics.pepxml)

L

length() (in module pyteomics.parser)

linear_regression() (in module pyteomics.auxiliary)

M

mass_data (pyteomics.mass.Unimod attribute)
memoize() (in module pyteomics.auxiliary)

mods (pyteomics.mass.Unimod attribute)
most_probable_isotopic_composition() (in module pyteomics.mass)

N

nist_mass (in module pyteomics.mass)

P

parse() (in module pyteomics.fasta)

(in module pyteomics.parser)

pI() (in module pyteomics.electrochem)

pK_dawson (in module pyteomics.electrochem)

pK_lehninger (in module pyteomics.electrochem)

pK_rodwell (in module pyteomics.electrochem)

pK_sillero (in module pyteomics.electrochem)

plot_function_3d() (in module pyteomics.pylab_aux)

plot_function_contour() (in module pyteomics.pylab_aux)

plot_line() (in module pyteomics.pylab_aux)

pyteomics.achrom (module)

pyteomics.auxiliary (module)

pyteomics.electrochem (module)
pyteomics.fasta (module)
pyteomics.mass (module)
pyteomics.mgf (module)
pyteomics.mzid (module)
pyteomics.mzml (module)
pyteomics.parser (module)
pyteomics.pepxml (module)
pyteomics.pylab_aux (module)
PyteomicsError

R

RCs_browne_hfba (in module pyteomics.achrom)
RCs_browne_tfa (in module pyteomics.achrom)
RCs_gilar_atlantis_ph10_0 (in module pyteomics.achrom)
RCs_gilar_atlantis_ph3_0 (in module pyteomics.achrom)
RCs_gilar_atlantis_ph4_5 (in module pyteomics.achrom)
RCs_gilar_beh (in module pyteomics.achrom)
RCs_gilar_beh_amide (in module pyteomics.achrom)
RCs_gilar_rp (in module pyteomics.achrom)
RCs_guo_ph2_0 (in module pyteomics.achrom)
RCs_guo_ph7_0 (in module pyteomics.achrom)

RCs_meek_ph2_1 (in module pyteomics.achrom)

RCs_meek_ph7_4 (in module pyteomics.achrom)

RCs_palmblad (in module pyteomics.achrom)

RCs_yoshida (in module pyteomics.achrom)

RCs_yoshida_lc (in module pyteomics.achrom)

RCs_zubarev (in module pyteomics.achrom)

read() (in module pyteomics.fasta)

(in module pyteomics.mgf)
(in module pyteomics.mzid)
(in module pyteomics.mzml)
(in module pyteomics.pepxml)

read_header() (in module pyteomics.mgf)

roc_curve() (in module pyteomics.pepxml)

S

scatter_trend() (in module pyteomics.pylab_aux)
std_aa_comp (in module pyteomics.mass)
std_aa_mass (in module pyteomics.mass)
std_amino_acids (in module pyteomics.parser)

std_cterm (in module pyteomics.parser)
std_ion_comp (in module pyteomics.mass)
std_labels (in module pyteomics.parser)
std_nterm (in module pyteomics.parser)

T

tostring() (in module pyteomics.parser)

U

Unimod (class in pyteomics.mass)

V

valid() (in module pyteomics.parser)

version_info() (in module pyteomics.mzid)

(in module pyteomics.mzml)
(in module pyteomics.pepxml)

W

write() (in module pyteomics.fasta)

(in module pyteomics.mgf)

write_decoy_db() (in module pyteomics.fasta)