Index

A

all_trees() (in module phylonetwork.generators)

ancestors() (phylonetwork.classes.PhyloNetwork method)

C

cluster() (phylonetwork.classes.PhyloNetwork method) cluster_representation() (phylonetwork.classes.PhyloNetwork method) common_taxa() (phylonetwork.classes.PhyloNetwork method) common_taxa_leaves() (phylonetwork.classes.PhyloNetwork method)

cophenetic_distance() (in module phylonetwork.distances) cophenetic_matrix() (phylonetwork.classes.PhyloNetwork method) CSA() (phylonetwork.classes.PhyloNetwork method)

D

depth() (phylonetwork.classes.PhyloNetwork method) descendant_nodes() (phylonetwork.classes.PhyloNetwork method)

descendant_taxa() (phylonetwork.classes.PhyloNetwork method)

E

elementary_nodes() (phylonetwork.classes.PhyloNetwork method)

eNewick() (phylonetwork.classes.PhyloNetwork method)

H

has_nested_taxa() (phylonetwork.classes.PhyloNetwork method)

height() (phylonetwork.classes.PhyloNetwork method)

I

interior_nodes() (phylonetwork.classes.PhyloNetwork method) is_elementary_node() (phylonetwork.classes.PhyloNetwork method) is_hybrid_node() (phylonetwork.classes.PhyloNetwork method) is_labelled() (phylonetwork.classes.PhyloNetwork method)

is_leaf() (phylonetwork.classes.PhyloNetwork method) is_phylogenetic_network() (phylonetwork.classes.PhyloNetwork method) is_root() (phylonetwork.classes.PhyloNetwork method) is_tree_node() (phylonetwork.classes.PhyloNetwork method)

L

label() (phylonetwork.classes.PhyloNetwork method) labelled_nodes() (phylonetwork.classes.PhyloNetwork method)

LCSA() (phylonetwork.classes.PhyloNetwork method) leaves() (phylonetwork.classes.PhyloNetwork method)

M

mu() (phylonetwork.classes.PhyloNetwork method) mu_distance() (in module phylonetwork.distances)

mu_string() (phylonetwork.classes.PhyloNetwork method)

N

nested_label() (phylonetwork.classes.PhyloNetwork method) nested_label_distance() (in module phylonetwork.distances) nested_label_representation() (phylonetwork.classes.PhyloNetwork method) nodal_area() (phylonetwork.classes.PhyloNetwork method) nodal_distance_splitted() (in module phylonetwork.distances) nodal_distance_unsplitted() (in module phylonetwork.distances) nodal_matrix() (phylonetwork.classes.PhyloNetwork method) node_by_taxa() (phylonetwork.classes.PhyloNetwork method)

nodes_by_taxa() (phylonetwork.classes.PhyloNetwork method) number_of_trees_bin_nont_global() (in module phylonetwork.generators) number_of_trees_bin_nont_partial() (in module phylonetwork.generators) number_of_trees_bin_nt_partial() (in module phylonetwork.generators) number_of_trees_nobin_nont_global() (in module phylonetwork.generators) number_of_trees_nobin_nont_partial() (in module phylonetwork.generators) number_of_trees_nobin_nt_partial() (in module phylonetwork.generators)

P

PhyloNetwork (class in phylonetwork.classes) phylonetwork (module) phylonetwork.classes (module)

phylonetwork.distances (module) phylonetwork.generators (module)

R

random_tree_bin_nont_global() (in module phylonetwork.generators) random_tree_bin_nt_global() (in module phylonetwork.generators) random_tree_generator() (in module phylonetwork.generators) random_tree_nobin_nont_global() (in module phylonetwork.generators)

random_tree_nobin_nt_global() (in module phylonetwork.generators) RF_distance() (in module phylonetwork.distances) roots() (phylonetwork.classes.PhyloNetwork method)

S

set_label() (phylonetwork.classes.PhyloNetwork method) sorted_nodes() (phylonetwork.classes.PhyloNetwork method) strict_ancestors() (phylonetwork.classes.PhyloNetwork method)

strict_descendant_nodes() (phylonetwork.classes.PhyloNetwork method) strict_descendant_taxa() (phylonetwork.classes.PhyloNetwork method)

T

taxa() (phylonetwork.classes.PhyloNetwork method) topological_restriction() (phylonetwork.classes.PhyloNetwork method)

transposition_distance() (in module phylonetwork.distances)

U

unlabelled_nodes() (phylonetwork.classes.PhyloNetwork method)