====================
RNA-seq Count Based Modules
====================
Modules available in the count-based RNA-seq Pipeline. 

.. rst-class:: html-toggle
FASTQC
=======
.. automodule:: omics_pipe.modules.fastqc
	:members:

.. rst-class:: html-toggle	
STAR Aligner
============	
.. automodule:: omics_pipe.modules.star
	:members:

.. rst-class:: html-toggle		
HTSEQ-count
=================
.. automodule:: omics_pipe.modules.htseq
	:members:	
	
.. rst-class:: html-toggle			
R Summary Report - DESEQ2
===============================
.. automodule:: omics_pipe.modules.RNAseq_report_counts
	:members: