Index

B

bivariate_spike_distance() (in module fit_neuron.evaluate.spkd_lib)

C

calc_param_dict() (fit_neuron.optimize.subthreshold.Voltage method) compute_log_likelihood() (in module fit_neuron.optimize.threshold) compute_spike_shapes() (in module fit_neuron.data.extract_spikes)

compute_t_ref() (in module fit_neuron.data.extract_spikes) compute_Vr() (in module fit_neuron.data.extract_spikes) compute_X_subthresh() (fit_neuron.optimize.subthreshold.Voltage method)

D

dl_file() (in module fit_neuron.data.dl_neuron_data)

dt (fit_neuron.optimize.sic_lib.ExpDecay_sic attribute) (fit_neuron.optimize.sic_lib.StepSic attribute) (fit_neuron.optimize.subthreshold.Voltage attribute)

E

easy_test() (in module fit_neuron.tests.test_model) estimate_thresh_parameters() (in module fit_neuron.optimize.threshold) estimate_V_rest() (fit_neuron.optimize.subthreshold.Voltage method)

estimate_volt_parameters() (in module fit_neuron.optimize.subthreshold) ExpDecay (class in fit_neuron.evaluate.spkd_lib) ExpDecay_sic (class in fit_neuron.optimize.sic_lib)

F

find_corner_spikes() (in module fit_neuron.evaluate.spkd_lib) firing_rate() (in module fit_neuron.evaluate.spkd_lib) fit() (fit_neuron.models.gLIF.gLIF_model method) fit_neuron() (in module fit_neuron.optimize.fit_gLIF) fit_neuron.__init__ (module) fit_neuron.data (module) fit_neuron.data.data_loader (module) fit_neuron.data.dl_neuron_data (module) fit_neuron.data.extract_spikes (module) fit_neuron.data.my_data (module) fit_neuron.evaluate (module) fit_neuron.evaluate.evaluate (module) fit_neuron.evaluate.spkd_lib (module)

fit_neuron.models (module) fit_neuron.models.gLIF (module) fit_neuron.optimize (module) fit_neuron.optimize.fit_gLIF (module) fit_neuron.optimize.neuron_base_obj (module) fit_neuron.optimize.sic_lib (module) fit_neuron.optimize.subthreshold (module) fit_neuron.optimize.threshold (module) fit_neuron.tests (module) fit_neuron.tests.test (module) fit_neuron.tests.test_load_neuron (module) fit_neuron.tests.test_model (module)

G

gamma_factor() (in module fit_neuron.evaluate.spkd_lib) get_gamma_factor() (in module fit_neuron.evaluate.spkd_lib) get_grad_and_hessian() (in module fit_neuron.optimize.threshold)

get_param_dict() (fit_neuron.optimize.neuron_base_obj.Neuron method) gLIF_model (class in fit_neuron.models.gLIF)

I

is_fitted (fit_neuron.models.gLIF.gLIF_model attribute) is_noise() (in module fit_neuron.data.data_loader)

is_spiking (fit_neuron.optimize.subthreshold.Voltage attribute)

K

k (fit_neuron.optimize.sic_lib.ExpDecay_sic attribute)

L

load_neuron_data() (in module fit_neuron.data.data_loader)

load_neuron_files() (in module fit_neuron.data.data_loader)

M

max_likelihood() (in module fit_neuron.optimize.threshold) multivariate_spike_distance() (in module fit_neuron.evaluate.spkd_lib)

MySweep (class in fit_neuron.data.my_data)

N

Neuron (class in fit_neuron.optimize.neuron_base_obj)

P

par_calc_log_like_update() (in module fit_neuron.optimize.threshold) param_arr (fit_neuron.optimize.subthreshold.Voltage attribute) param_ct (fit_neuron.optimize.subthreshold.Voltage attribute) param_dict (fit_neuron.optimize.subthreshold.Voltage attribute) plot_sim_vs_real() (in module fit_neuron.evaluate.evaluate)

plot_spk_performance_metrics() (in module fit_neuron.evaluate.evaluate) plot_test_load_neuron() (in module fit_neuron.tests.test_load_neuron) predict() (fit_neuron.models.gLIF.gLIF_model method) ProcessedData (class in fit_neuron.data.my_data)

R

raw_2_processed() (in module fit_neuron.data.my_data) RawData (class in fit_neuron.data.my_data)

reset() (fit_neuron.evaluate.spkd_lib.ExpDecay method) (fit_neuron.optimize.neuron_base_obj.Neuron method) (fit_neuron.optimize.sic_lib.ExpDecay_sic method) (fit_neuron.optimize.sic_lib.SicBase method) (fit_neuron.optimize.sic_lib.StepSic method) (fit_neuron.optimize.subthreshold.Voltage method) (fit_neuron.optimize.threshold.StochasticThresh method)

S

schreiber_sim() (in module fit_neuron.evaluate.spkd_lib) set_param() (fit_neuron.optimize.subthreshold.Voltage method) (fit_neuron.optimize.threshold.StochasticThresh method) setup_regression() (in module fit_neuron.optimize.subthreshold) sic_val (fit_neuron.optimize.sic_lib.ExpDecay_sic attribute) (fit_neuron.optimize.sic_lib.StepSic attribute) SIC_values (fit_neuron.optimize.subthreshold.Voltage attribute) SicBase (class in fit_neuron.optimize.sic_lib) simulate() (in module fit_neuron.evaluate.evaluate)

spike() (fit_neuron.evaluate.spkd_lib.ExpDecay method) (fit_neuron.optimize.sic_lib.ExpDecay_sic method) (fit_neuron.optimize.sic_lib.SicBase method) (fit_neuron.optimize.sic_lib.StepSic method) (fit_neuron.optimize.subthreshold.Voltage method) spike_prob (fit_neuron.optimize.threshold.StochasticThresh attribute) spk_from_bio() (in module fit_neuron.data.extract_spikes) spk_from_sim() (in module fit_neuron.data.extract_spikes) StepSic (class in fit_neuron.optimize.sic_lib) StochasticThresh (class in fit_neuron.optimize.threshold)

T

t_hist (fit_neuron.optimize.sic_lib.StepSic attribute) t_max (fit_neuron.optimize.sic_lib.StepSic attribute) (fit_neuron.optimize.threshold.StochasticThresh attribute) t_ref (fit_neuron.optimize.subthreshold.Voltage attribute) t_spike_counter (fit_neuron.optimize.subthreshold.Voltage attribute) test() (in module fit_neuron.evaluate.spkd_lib)

test_biv_spk() (in module fit_neuron.evaluate.spkd_lib) test_eval_sav_results() (in module fit_neuron.tests.test) test_fit_neuron() (in module fit_neuron.tests.test) test_load_neuron() (in module fit_neuron.tests.test_load_neuron) thresh_param (fit_neuron.optimize.threshold.StochasticThresh attribute)

U

unzip_test_data() (in module fit_neuron.data.dl_neuron_data) update() (fit_neuron.evaluate.spkd_lib.ExpDecay method) (fit_neuron.optimize.neuron_base_obj.Neuron method) (fit_neuron.optimize.sic_lib.ExpDecay_sic method) (fit_neuron.optimize.sic_lib.SicBase method) (fit_neuron.optimize.sic_lib.StepSic method) (fit_neuron.optimize.subthreshold.Voltage method) (fit_neuron.optimize.threshold.StochasticThresh method)

update_spike_counter() (fit_neuron.optimize.subthreshold.Voltage method) update_X_arr() (fit_neuron.optimize.threshold.StochasticThresh method)

V

V_rest (fit_neuron.optimize.subthreshold.Voltage attribute) van_rossum_dist() (in module fit_neuron.evaluate.spkd_lib) victor_purpura_dist() (in module fit_neuron.evaluate.spkd_lib) volt_adapt_currents (fit_neuron.optimize.threshold.StochasticThresh attribute)

volt_adapt_time_const (fit_neuron.optimize.threshold.StochasticThresh attribute) volt_nonlin_fcn (fit_neuron.optimize.subthreshold.Voltage attribute) Voltage (class in fit_neuron.optimize.subthreshold) Vr (fit_neuron.optimize.subthreshold.Voltage attribute)