Index

_

__init__() (cruzdb.Genome method)

A

ABase (class in cruzdb.models)

annotate() (cruzdb.Genome method)

B

bed() (cruzdb.models.ABase method) bed12() (cruzdb.models.ABase method) bin_query() (cruzdb.Genome method)

bins (cruzdb.models.ABase attribute) bins() (cruzdb.Genome static method) blat() (cruzdb.models.ABase method)

C

cds (cruzdb.models.ABase attribute) cds_sequence (cruzdb.models.ABase attribute) cdss (cruzdb.models.ABase attribute)

coding_exons (cruzdb.models.ABase attribute) create_url() (cruzdb.Genome method) cruzdb.models (module)

D

dataframe() (cruzdb.Genome method) david_go() (cruzdb.Genome static method)

distance() (cruzdb.models.ABase method) (cruzdb.models.Interval method) downstream() (cruzdb.Genome method) (cruzdb.models.ABase method)

E

exons (cruzdb.models.ABase attribute)

F

features() (cruzdb.models.ABase method)

G

gene_features (cruzdb.models.ABase attribute)

Genome (class in cruzdb), [1]

I

Interval (class in cruzdb.models) is_downstream_of() (cruzdb.models.ABase method)

is_gene_pred (cruzdb.models.ABase attribute) is_upstream_of() (cruzdb.models.ABase method) (cruzdb.models.Interval method)

K

knearest() (cruzdb.Genome method)

L

load_file() (cruzdb.Genome method)

localize() (cruzdb.models.ABase method)

M

mirror() (cruzdb.Genome method)

mrna_sequence (cruzdb.models.ABase attribute)

N

ncbi_blast() (cruzdb.models.ABase method)

O

overlaps() (cruzdb.models.Interval method)

P

position (cruzdb.models.ABase attribute)

promoter() (cruzdb.models.ABase method)

S

save_bed() (cruzdb.Genome class method) sequence() (cruzdb.models.ABase method)

sql() (cruzdb.Genome method)

T

tss() (cruzdb.models.ABase method)

U

upstream() (cruzdb.Genome method) (cruzdb.models.ABase method) utr3 (cruzdb.models.ABase attribute)

utr5 (cruzdb.models.ABase attribute)