.. contents::



Data Structures
================

CNOgraph module
--------------------

.. automodule:: cellnopt.core.cnograph
    :members:
    :undoc-members:
    :synopsis: 

MIDAS related
--------------

MIDAS
~~~~~~~~
.. automodule:: cellnopt.core.midas
    :members:
    :undoc-members:
    :synopsis: 



normalisation
~~~~~~~~~~~~~~~~
.. automodule:: cellnopt.core.normalisation
    :members:
    :undoc-members:
    :synopsis: 


SIF
------

.. automodule:: cellnopt.core.sif
    :members:
    :undoc-members:
    :inherited-members:
    :synopsis: 

Converters
===========


SIF2ASP module
------------------
.. automodule:: cellnopt.core.sif2asp
    :members:
    :undoc-members:
    :synopsis: 

asp module
------------------
.. automodule:: cellnopt.core.asp
    :members:
    :undoc-members:
    :synopsis: 

ADJ2SIF module
------------------

.. automodule:: cellnopt.core.adj2sif
    :members:
    :undoc-members:
    :synopsis: 

SOP2SIF module
-----------------

.. automodule:: cellnopt.core.sop2sif
    :members:
    :undoc-members:
    :synopsis: 


EDA module
--------------

.. automodule:: cellnopt.core.io.eda
    :members:
    :undoc-members:
    :synopsis: 


Others
==========


Interaction class
--------------------

.. automodule:: cellnopt.core.converter
    :members:
    :undoc-members:
    :inherited-members:
    :synopsis: 

kinexus
------------

.. automodule:: cellnopt.core.io.kinexus
    :members:
    :undoc-members:
    :inherited-members:
    :synopsis: 



Reactions module
------------------

.. automodule:: cellnopt.core.reactions
    :members:
    :undoc-members:
    :inherited-members:
    :synopsis: 


Metabolites module
-------------------

.. automodule:: cellnopt.core.metabolites
    :members:
    :undoc-members:
    :inherited-members:
    :synopsis: 



.. autofunction:: cellnopt.core.get_share_file