StochPy’s Userguide

• Introduction
  • Module 1: Demo
  • Module 2: Utilities
• Using StochPy
  • Modeling input
  • Module 3: Stochastic Simulation Algorithm
  • Combining StochPy with Python Scientific Libraries
  • Using StochPy as a Library
  • Getting fixed-interval Output
  • Stochastic Test suite
  • Module 4: Cell Division
  • Module 5: SBML2PSC
• Installation and Configuration
  • Installation
  • Configuration
• Stochastic Rate Equations
  • Zero-order reaction
  • First-order reaction
  • Second-order reaction
  • Third-order reaction
• The PySCeS Model Description Language
  • Defining a PySCeS model
  • Advanced model construction
  • Example StochPy input files